PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17983
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 95aa    MW: 10104.7 Da    PI: 6.5296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17983genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W++ E e++ +a   +  +   +W+++a+ +g g+t+ +++ ++
         EMT17983  4 PWSESENERFERALDTYDRDtpgRWDRVAAAVGGGKTADDVRRHY 48
                     7*****************99************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-7154IPR001005SANT/Myb domain
PROSITE profilePS500907.236152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-5453IPR009057Homeodomain-like
PfamPF002491.2E-7448IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-11459IPR009057Homeodomain-like
CDDcd001673.56E-7452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAAPWSESEN ERFERALDTY DRDTPGRWDR VAAAVGGGKT ADDVRRHYDR LVDDLRRIEA  60
GANSNGGTHD AGSSSNGAGN NGSRGGSGGS RRPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-174611066RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630111.19e-24PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-21RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLN1QZU66e-62N1QZU6_AEGTA; Uncharacterized protein
TrEMBLW5G0G56e-62W5G0G5_WHEAT; Uncharacterized protein
STRINGBRADI1G67910.12e-23(Brachypodium distachyon)
STRINGLOC_Os03g14810.13e-23(Oryza sativa Japonica Group)
STRINGMLOC_69872.12e-23(Hordeum vulgare)
STRINGORGLA03G0104200.13e-23(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-22RAD-like 6